[BioC] overlap GRangesList and vcf

[Georg Otto]

Hi,


I apologise if this is trivial, but I haven't found a straight forward
way to do this so far.

Given a GRangesList with exons

## exons by gene
range.exon <- exonsBy(txdb.ensgene, "gene")

and a vcf file with SNP data (positions, alleles, etc), how can I
generate a list of exons that contain SNPs (along with SNP positions)?

Any hint will be appreciated!

Georg