[BioC] How to use cutome reference genome?
Yan He [guest]
guest at bioconductor.org
Fri Aug 31 11:31:16 CEST 2012
I am trying to use the MEDIPS package in Bioconductor. The tutorial says that one of the supplied reference genomes must be used. Does anyone know how to produce a custom reference genome in case one's genome of interest is not one that list? I am directed to BSgenome by the same question posted by Kelly V.. However, the BSgenome is based on the Biostrings-based genome data package. What should I do if I have my own sequenced genome sequence and not published yet?
Thanks very much for your help!
-- output of sessionInfo():
R version 2.15.1 (2012-06-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)
 LC_COLLATE=English_United States.1252
 LC_CTYPE=English_United States.1252
 LC_MONETARY=English_United States.1252
 LC_TIME=English_United States.1252
attached base packages:
 stats graphics grDevices utils datasets methods base
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