[BioC] Merging various panel for flow cytometry

[Mike]

Julien,

I don't think you can merge these two panels by paring rows/cells across samples. You may have to stick to two individual flowSets to represent,analyze and visualize these two panels respectively. Once you've extracted the higher-level of population statistics (proportion, MFI,i.e.),you can merge/associate by patient info. You can use pData() method to read/set phenoData for flowSet (patient id, sample name,...).

Let me know if you need more help regarding to the usage of  these flow tools.

Mike