[BioC] gene set enrichment

[WATSON Mick]

The function phyper() can help you with this.

We also have a package called CORNA (http://corna.sourceforge.net/tutorial.html) that might help, but this needs to be updated for the latest version of R.

Mick


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-----Original Message-----
From: bioconductor-bounces at r-project.org [mailto:bioconductor-bounces at r-project.org] On Behalf Of Alpesh Querer
Sent: 02 December 2012 00:28
To: Bioconductor mailing list
Subject: [BioC] gene set enrichment

Hello all,

I have list of differentially expressed genes from an rna-seq analysis.
Also, I  have a two-column annotation file for the organism with the columns being gene and goterm.
please guide me towards a bioconductor package or any other tool that I could use my list and annotation file as input and do gene set enrichment analysis.

Thanks,
Al

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