[BioC] FDR (False Discovery Rate)

[Tina Asante Boahene]

Hi all,

Is it possible to find the FDR of DE genes in baySeq at a set percentage.

Is there a function used in the baySeq vignette to find the FDR at a set percentage.

Example to find the FDR for a topCounts at say 1% within baySeq.

TopCountP<-topCounts(CDPost.Poi, number = 22490, group = 2)

This will give all the FDR for this dataset, however is there a way to just have the result with a pre-set FDR. 

Also is there something similar for the DEGseq package.

Thanks.


Kind Regards

Tina