[BioC] DESeq dispersions for series

[Steve Lianoglou]

Hi,

On Mon, Feb 13, 2012 at 7:30 PM, Willie Nelson <nelson.wd at gmail.com> wrote:
> Greetings,
> I have a sample with four different conditions:
>
> 1uE, 10 uE, 100uE, 500uE
>
> The conditions are analyzed as pairs:
> 1uE vs10 uE
> 1uE vs 100 uE
> 1uE vs 500uE
>
> Using the examples in the DESeq tutorial it appears that I would have to
> analyze these pairs as having no replicates but I'm thinking I really have
> four replicates.

Oh?

So you're trying to identify genes differentially expressed between
replicates? :-)

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact