[BioC] how to get gene list for given GO terms?

[Martin Morgan]

On 02/27/2012 04:41 PM, Ou, Jianhong wrote:
> Hello All,
>
> Is there any package can extract a gene list for a given GO term from human genome?


For instance

library(org.Hs.egGO)
revmap(org.Hs.egGO)[["GO:0042254"]]
      IEA      IEA      IEA      IEA      IEA      IBA      IEA      IEA
    "705"   "3692"   "4809"   "6130"   "6175"   "6222"   "6838"  "10171"
      IEA      IEA       IC      NAS      IEA      IEA      IEA      IEA
  "10969"  "23212"  "23246"  "23246"  "23560"  "26164"  "26284"  "26574"
      IEA      IEA      IEA      IEA      IEA      IEA      IEA      IEA
  "29102"  "29889"  "51154"  "51187"  "54552"  "54680"  "55299"  "79631"
      IEA      IEA      IEA      IDA      IEA
  "81875"  "84864"  "85865"  "92345" "124995"

see

   vignette(package="AnnotationDbi", "AnnotationDbi")

Martin

>
> Thanks a lot.
>
> Yours sincerely,
>
> Jianhong Ou
>
> jianhong.ou at umassmed.edu
>
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