[BioC] goseq installation - BiasedUrn is not available

[Dan Tenenbaum]

On Mon, Jul 2, 2012 at 10:32 PM, steve Shen <shen.sq at gmail.com> wrote:
> Hi All,
>
> Can someone help me out? The system is the newest version of mac.
>
> Thanks in advance,
> Steve
>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("goseq")
> BioC_mirror: http://bioconductor.org
> Using R version 2.15, BiocInstaller version 1.4.7.
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Installing package(s) 'goseq'
> Warning: unable to access index for repository
> http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Warning: dependency ‘BiasedUrn’ is not available
> trying URL '
> http://www.bioconductor.org/packages/2.10/bioc/bin/macosx/leopard/contrib/2.15/goseq_1.8.0.tgz
> '
> Content type 'application/x-gzip' length 765907 bytes (747 Kb)
> opened URL
> ==================================================
> downloaded 747 Kb
>
>
> The downloaded binary packages are in
>
> /var/folders/yj/z_hh_10d05z7f8crppm1j8xc0000gn/T//Rtmpyxvaqu/downloaded_packages
> Warning: unable to access index for repository
> http://lib.stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.15
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] edgeR_2.6.8         limma_3.12.1        BiocInstaller_1.4.7
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.1
>>
>

Looks like the CRAN mirror at CMU is down.
Try
chooseCRANmirror()
and pick a different one.

Dan


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