[BioC] Error message running through CQN Vignette

[Kasper Daniel Hansen]

R is case sensitive.

so use
  data(uCovar)
not
  data(UCovar)

And make sure cqn is actually installed.

Kasper

On Tue, Jul 3, 2012 at 4:04 PM, Richard Friedman
<friedman at cancercenter.columbia.edu> wrote:
> Dear List,
>
>         I am running through the CQN Vignette
> and I get the following error message:
>
>> data(UCovar)
> Warning message:
> In data(UCovar) : data set ‘UCovar’ not found
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
>  [1] splines   tools     tcltk     stats     graphics  grDevices utils     datasets
>  [9] methods   base
>
> other attached packages:
>  [1] oneChannelGUI_1.22.8  cqn_1.2.0             quantreg_4.79         SparseM_0.96
>  [5] preprocessCore_1.18.0 nor1mix_1.1-3         mclust_3.4.11         Rsamtools_1.8.5
>  [9] Biostrings_2.24.1     GenomicRanges_1.8.7   IRanges_1.14.4        tkWidgets_1.34.0
> [13] DynDoc_1.34.0         widgetTools_1.34.0    affylmGUI_1.30.0      affyio_1.24.0
> [17] affy_1.34.0           limma_3.12.1          Biobase_2.16.0        BiocGenerics_0.2.0
>
> loaded via a namespace (and not attached):
> [1] BiocInstaller_1.4.7 bitops_1.0-4.1      stats4_2.15.1       zlibbioc_1.2.0
>
> I would appreciate any suggestions.
>
> Thanks and best wishes,
> Rich
> Richard A. Friedman, PhD
> Associate Research Scientist,
> Biomedical Informatics Shared Resource
> Herbert Irving Comprehensive Cancer Center (HICCC)
> Lecturer,
> Department of Biomedical Informatics (DBMI)
> Educational Coordinator,
> Center for Computational Biology and Bioinformatics (C2B2)/
> National Center for Multiscale Analysis of Genomic Networks (MAGNet)
> Room 824
> Irving Cancer Research Center
> Columbia University
> 1130 St. Nicholas Ave
> New York, NY 10032
> (212)851-4765 (voice)
> friedman at cancercenter.columbia.edu
> http://cancercenter.columbia.edu/~friedman/
>
> "School is an evil plot to suppress my individuality"
>
> Rose Friedman, age15
>
>
>         [[alternative HTML version deleted]]
>
>
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