[BioC] BiomaRt - Flanking regions

[James W. MacDonald]

Hi Avoks,

It depends on what you mean by 'flanking gene regions'. Do you want the 
sequences? The coordinates?

Assuming you want the sequences:

library(biomaRt)
?getSequence

Best,

Jim



On 7/16/2012 9:53 AM, Ovokeraye Achinike-Oduaran wrote:
> Hi all,
>
> I had a quick question on how to get flanking gene regions using
> biomaRt to access Biomart. I used listAttributes() to see what my
> options were but I could not quite figure it out. Any ideas?
>
> Thanks and kind regards.
>
> -Avoks
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099