[BioC] restrict transcriptDB object to "known" genes

Stefanie stefanie.tauber at univie.ac.at
Tue Jun 12 12:09:21 CEST 2012


Dear list,

I would like to retrieve genomic ranges via makeTranscriptDbFromUSCS.
At the moment I just use:

humanDB = makeTranscriptDbFromUSCS(genome = "hg19", tablename = "ensGene")

Is there an automatic way to restrict my humanDB to those genes that a "known"
status (not novel)?

best,
stefanie



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