[BioC] Printing arrayQualityMetrics report

[Wolfgang Huber]

Dear James

that is one way to go about it. A more direct way for getting at this 
table is to keep the return value of the call to the function 
arrayQualityMetrics:

   myReport = arrayQualityMetrics( eset, ...)

and access the table via

   myReport$arrayTable

Please use arrayQualityMetrics >= 3.13.5 for this (unfortunately in 
previous versions due to an oversight of mine this object was not 
propagated all the way to the return value of arrayQualityMetrics).

Version 3.13.5 is in svn and should also soon be on the website / in the 
package repository. It also fixes the 'intgroup' issue reported by Sonal 
and Tim.

	Best wishes
	Wolfgang





James F. Reid scripsit 06/22/2012 10:11 AM:

...[snip]

> you could extract the table contents using the readHTMLTable function
> from the 'XML' package and for the figures just include the pdfs as
> figures and add a caption to them.
>
> HTH,
> J.

Best wishes
	Wolfgang

Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber