[BioC] BiomaRt Details

[Ovokeraye Achinike-Oduaran]

Thanks a bunch, Steffen.

-Avoks

On Wed, Jun 27, 2012 at 6:04 PM, Steffen Durinck
<durinck.steffen at gene.com> wrote:
> Hi Avoks,
>
> By default biomaRt queries www.biomart.org so these are always in sync.
> You can get the version of the BioMarts by using the listMarts function:
>
>> listMarts()
>                                  biomart
>              version
> 1                                ensembl                             ENSEMBL
> GENES 67 (SANGER UK)
> 2                                    snp                         ENSEMBL
> VARIATION 67 (SANGER UK)
> 3                    functional_genomics                        ENSEMBL
> REGULATION 67 (SANGER UK)
> 4                                   vega
> VEGA 47  (SANGER UK)
> ....
>
>
> Cheers,
> Steffen
>
>
>
> On Wed, Jun 27, 2012 at 8:05 AM, Ovokeraye Achinike-Oduaran
> <ovokeraye at gmail.com> wrote:
>>
>> Hi all,
>>
>> I've been working with biomaRt 2.12.0 and would like to know what
>> versions of Ensembl, dbSNP, Variation, etc it's using. Is it the exact
>> same as on the web interface (www.biomart.org)?
>>
>> Thanks and regards,
>>
>> Avoks
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>