[BioC] unable to readImage using EBImage package

[Dan Tenenbaum]

On Tue, Mar 6, 2012 at 7:25 PM, Nurdiyanah Jambari <yanadj28 at gmail.com> wrote:
>
>
> ---------- Forwarded message ----------
> From: Nurdiyanah Jambari <yanadj28 at gmail.com>
> Date: Wed, Mar 7, 2012 at 10:50 AM
> Subject: Re: [BioC] unable to readImage using EBImage package
> To: Henrik Bengtsson <hb at biostat.ucsf.edu>
>
>
>> library("EBImage")
>
>> sessionInfo()
> R version 2.14.1 (2011-12-22)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
> States.1252    LC_MONETARY=English_United States.1252
> LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] EBImage_3.10.0 abind_1.4-0
>
> loaded via a namespace (and not attached):
> [1] tools_2.14.1
>
>
>
>

I have found that for Windows, EBImage does not like the most recent
version of GTK+.
You should install the version specified in the EBImage installation vignette:

http://ftp.gnome.org/pub/gnome/binaries/win32/gtk+/2.16/gtk+-bundle_2.16.6-20100912_win32.zip

Dan


>
>
> On Wed, Mar 7, 2012 at 10:47 AM, Henrik Bengtsson <hb at biostat.ucsf.edu>
> wrote:
>>
>> They're also interested in details about EBImage, so:
>>
>> > library("EBImage");
>> > sessionInfo();
>>
>> Over and out.
>>
>> /Henrik
>>
>> On Tue, Mar 6, 2012 at 6:16 PM, Nurdiyanah Jambari <yanadj28 at gmail.com>
>> wrote:
>> > Sorry, I miss understood your request. This is the output of my
>> > sessionInfo():
>> >
>> >> sessionInfo()
>> > R version 2.14.1 (2011-12-22)
>> > Platform: i386-pc-mingw32/i386 (32-bit)
>> >
>> > locale:
>> > [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
>> > States.1252    LC_MONETARY=English_United States.1252
>> > LC_NUMERIC=C
>> > [5] LC_TIME=English_United States.1252
>> >
>> > attached base packages:
>> > [1] stats     graphics  grDevices utils     datasets  methods   base
>> >
>> >
>> >
>> > On Wed, Mar 7, 2012 at 9:42 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> > wrote:
>> >
>> >> On Tue, Mar 6, 2012 at 4:35 PM, Nurdiyanah Jambari <yanadj28 at gmail.com>
>> >> wrote:
>> >> > Sorry, I forgot to mention that the system will go to not responding
>> >> > and
>> >> > need to be closed after the pop-up message appear.
>> >> >
>> >>
>> >> Please post the output of sessionInfo(), run it immediately before the
>> >> command that causes the error.
>> >>
>> >> Thanks,
>> >> Dan
>> >>
>> >> >
>> >> >
>> >> >
>> >> > On Wed, Mar 7, 2012 at 8:30 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> >> wrote:
>> >> >>
>> >> >> On Tue, Mar 6, 2012 at 4:26 PM, Nurdiyanah Jambari
>> >> >> <yanadj28 at gmail.com>
>> >> >> wrote:
>> >> >> > This error happen while I'm trying to view the example image.
>> >> >> > These is
>> >> >> > because I read from the manual, if I want to make sure that the
>> >> package
>> >> >> > is
>> >> >> > install correctly, it should be able to display the "lena.gif"
>> >> >> > image:
>> >> >> >
>> >> >> >
>> >> >> >>library("EBImage")
>> >> >> >>f = system.file("images", "lena.gif", package="EBImage")
>> >> >> >>lena = readImage(f)
>> >> >> >>display(lena)
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> Please post the output of
>> >> >> sessionInfo()
>> >> >> Thanks
>> >> >> Dan
>> >> >>
>> >> >>
>> >> >> >
>> >> >> > On Wed, Mar 7, 2012 at 3:14 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> >> >> > wrote:
>> >> >> >>
>> >> >> >> On Tue, Mar 6, 2012 at 12:39 AM, Nurdiyanah Jambari
>> >> >> >> <yanadj28 at gmail.com>
>> >> >> >> wrote:
>> >> >> >> > Hi,
>> >> >> >> >
>> >> >> >> > Please help me with these problem. Every time I'm trying to
>> >> >> >> > display
>> >> >> >> > the
>> >> >> >> > example image, I receive these kind of pop-up warning:
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > ** (<unknown>:2932): WARNING **: No builtin or dynamically
>> >> >> >> > loaded
>> >> >> >> > modules
>> >> >> >> > were found. Pango will not work correctly. This probably means
>> >> >> >> > there was an error in the creation of:
>> >> >> >> >   'C:\Windows\system32\etc\pango\pango.modules'
>> >> >> >> > You may be able to recreate this file by running
>> >> pango-querymodules.
>> >> >> >> >
>> >> >> >> > (<unknown>:2932): GLib-GObject-CRITICAL **: file gobject.c:
>> >> >> >> > line
>> >> 1561
>> >> >> >> > (g_object_
>> >> >> >> > ref): assertion `G_IS_OBJECT (object)' failed
>> >> >> >> >
>> >> >> >> > ** (<unknown>:2932): CRITICAL **: file pango-engine.c: line 68
>> >> >> >> > (_pango_engine_sh
>> >> >> >> > ape_shape): assertion `PANGO_IS_FONT (font)' failed
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > I have try several method that I found searching from the
>> >> >> >> > internet,
>> >> >> >> > but
>> >> >> >> > still I could not fix these problem.
>> >> >> >>
>> >> >> >> It's difficult for us to help without knowing the exact commands
>> >> >> >> you
>> >> >> >> tried that caused this error, and more information about your
>> >> >> >> system
>> >> >> >> (e.g., the output of the sessionInfo() function).
>> >> >> >>
>> >> >> >> Dan
>> >> >> >>
>> >> >> >>
>> >> >> >> >
>> >> >> >> >
>> >> >> >> > Nurdiyanah Bt Hj Jambari
>> >> >> >> > Student
>> >> >> >> > Faculty of Engineering
>> >> >> >> > Bachelor Engineering of Computer & Communication System
>> >> >> >> > Engineering
>> >> >> >> > University Putra Malaysia
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > --
>> >> >> > Nurdiyanah Bt Hj Jambari
>> >> >> > Student
>> >> >> > Faculty of Engineering
>> >> >> > Bachelor Engineering of Computer & Communication System
>> >> >> > Engineering
>> >> >> > University Putra Malaysia
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > --
>> >> > Nurdiyanah Bt Hj Jambari
>> >> > Student
>> >> > Faculty of Engineering
>> >> > Bachelor Engineering of Computer & Communication System Engineering
>> >> > University Putra Malaysia
>> >>
>> >
>> >
>> >
>> > --
>> > Nurdiyanah Bt Hj Jambari
>> > Student
>> > Faculty of Engineering
>> > Bachelor Engineering of Computer & Communication System Engineering
>> > University Putra Malaysia
>> >
>> >        [[alternative HTML version deleted]]
>>
>> >
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>
>
>
>
> --
> Nurdiyanah Bt Hj Jambari
> Student
> Faculty of Engineering
> Bachelor Engineering of Computer & Communication System Engineering
> University Putra Malaysia
>
>
>
> --
> Nurdiyanah Bt Hj Jambari
> Student
> Faculty of Engineering
> Bachelor Engineering of Computer & Communication System Engineering
> University Putra Malaysia