[BioC] How can I access to a gene set

[James W. MacDonald]

Hi Lola,

On 3/22/2012 8:33 AM, Lola Guerrero wrote:
> Dear all,
>
>
>
> I have run a Hypergeometric test and so far so good. Now I am interested in the
> gene set that belong to a particular ontology. Do you know if exist any way to
> access to these genes? I mean, if for example I have an ontology which is
> defined by 10 genes and in my case the test count 5, how can I access to these
> genes?

It depends on what package you used. If you used the GOstats package, 
then there is probeSetSummary().

Best,

Jim


>
>
>
> I’ll appreciate any help! Thank you very much for your help!
>
>
>
> Lola Guerrero
>
>
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>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099