[BioC] F p.value.adj missing from write.fit/limma

[Pascal Gellert]

Dear Bioconductor members,

I am using limma to analyze my microarrays. Therefore I apply lmFit and 
eBayes on my normalized data. Finally I write the result to a text file 
by write.fit function. For multiple testing correction I chose 
adjust='fdr' in the write.fit function. Usually everything works just as 
it should. However in some cases, the result file does not contain the 
column "F p.value.adj". The columns with the adjusted p-values 
("p.value.adj") and p-value for the F-statistic ("F p.value") are present.
Obviously I am doing something wrong, but I cannot figure out what it is 
since I am using exactly the same code for different data sets and the 
"F p.value.adj" column does not show up for one data set only.

Thanks for your help,

Pascal


R version 2.10.1 (2009-12-14)
limma_3.2.3