[BioC] Error loading charm

[Benilton Carvalho]

I can't reproduce the issue... I just installed it (using both
type='source' and type='mac.binary.leopard') and everything worked as
expected...

> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

other attached packages:
 [1] charm_2.2.0         genefilter_1.38.0   fields_6.6.3
 [4] spam_0.28-0         SQN_1.0.4           nor1mix_1.1-3
 [7] mclust_3.4.11       Biobase_2.16.0      BiocGenerics_0.2.0
[10] BiocInstaller_1.4.4 RColorBrewer_1.0-5

loaded via a namespace (and not attached):
 [1] affxparser_1.28.0     affyio_1.24.0         annotate_1.34.0
 [4] AnnotationDbi_1.18.0  Biostrings_2.24.1     bit_1.1-9
 [7] BSgenome_1.24.0       codetools_0.2-8       DBI_0.2-5
[10] ff_2.2-6              foreach_1.4.0         GenomicRanges_1.8.3
[13] gtools_2.6.2          IRanges_1.14.2        iterators_1.0.6
[16] limma_3.12.0          MASS_7.3-17           multtest_2.12.0
[19] oligo_1.21.3          oligoClasses_1.18.0   parallel_2.15.0
[22] preprocessCore_1.18.0 RSQLite_0.11.1        siggenes_1.30.0
[25] splines_2.15.0        stats4_2.15.0         survival_2.36-12
[28] sva_3.2.0             tools_2.15.0          xtable_1.7-0
[31] zlibbioc_1.2.0


On 3 May 2012 13:37, Francesco Mancuso <francesco.mancuso at crg.eu> wrote:
> Hi!
> with the usual
>
>     source("http://bioconductor.org/biocLite.R")
>     biocLite("charm")
>
> Cheers,
> Francesco
>
>
> On 03/05/2012 14:33, Benilton Carvalho wrote:
>
> How did you install 'charm'?
>
>
> On 3 May 2012 12:50, Francesco Mancuso <francesco.mancuso at crg.eu> wrote:
>
> Dear list,
> I have the following error when calling the package "charm".
>
>  > library(charm)
> Error in get(Info[i, 1], envir = env) :
>   internal error -3 in R_decompress1
> Error: package/namespace load failed for 'charm'
>
> Do you have any ideas of what does it mean?
> Meny thanks in advance.
>
> Best,
> Francesco
>
>
>  > sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] C/en_US.UTF-8/C/C/C/C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
>  [1] bit_1.1-8           genefilter_1.38.0   RColorBrewer_1.0-5
> fields_6.6.3        spam_0.28-0         SQN_1.0.4           nor1mix_1.1-3
>  [8] mclust_3.4.11       Biobase_2.16.0      BiocGenerics_0.2.0
> BiocInstaller_1.4.4
>
> loaded via a namespace (and not attached):
>  [1] AnnotationDbi_1.18.0 DBI_0.2-5            IRanges_1.14.2
> RSQLite_0.11.1       affxparser_1.28.0    affyio_1.24.0
>  [7] annotate_1.34.0      splines_2.15.0       stats4_2.15.0
> survival_2.36-14     tools_2.15.0         xtable_1.7-0
> [13] zlibbioc_1.2.0
> --
>
> *Francesco Mattia Mancuso*
> Bioinformatician
>
> - Bioinformatics Core Facility
> - Proteomics Core Facility
>
> CRG-Centre for Genomic Regulation (Room 439)
> C/ Dr. Aiguader, 88 (Edif. PRBB)
> 08003 Barcelona, Spain
>
> Mail: francesco.mancuso at crg.eu <mailto:francesco.mancuso at crg.eu>
> Phone: +34 933160202
> http://www.crg.es/bioinformatics_unit
>
>        [[alternative HTML version deleted]]
>
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> .
>
>
> --
>
> Francesco Mattia Mancuso
> Bioinformatician
>
> - Bioinformatics Core Facility
> - Proteomics Core Facility
>
> CRG-Centre for Genomic Regulation (Room 439)
> C/ Dr. Aiguader, 88 (Edif. PRBB)
> 08003 Barcelona, Spain
>
> Mail: francesco.mancuso at crg.eu
> Phone: +34 933160202
> http://www.crg.es/bioinformatics_unit