[BioC] lumiHumanIDMapping package does not exist for windows?

Ekta Jain Ekta_Jain at jubilantbiosys.com
Fri May 4 06:42:18 CEST 2012


Hi Dan,
Found the windows package at http://bioc.ism.ac.jp/2.8/data/annotation/html/lumiHumanIDMapping.html

I am going to download and use this as a locally downloaded package. It is version 1.10 which I think is the latest version?

Regards,
Ekta

-----Original Message-----
From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org] 
Sent: 04 May 2012 09:25
To: Ekta Jain
Cc: bioconductor at r-project.org
Subject: Re: [BioC] lumiHumanIDMapping package does not exist for windows?

On Thu, May 3, 2012 at 8:35 PM, Ekta Jain <Ekta_Jain at jubilantbiosys.com> wrote:
> Dear Dan,
> That wouldn't work as well. If we don't have the package available on Bioconductor.org then biocLite will not be able to download it.
>

What is the exact error message, and the output of sessionInfo()?

Also what is the output of
 getOption("BioC_mirror")
?

> I did originally start with the way you suggested. When it didn't work thought of downloading the relevant .gz file from Bioconductor, which is not available.
>


The .gz file is available, see the you emailed. However, biocLite() is
the preferred way to install it, so let's figure out why that is not
working.
Dan


> Any help would be great !!!
>
> Thanks,
> Ekta
>
> -----Original Message-----
> From: Dan Tenenbaum [mailto:dtenenba at fhcrc.org]
> Sent: 03 May 2012 23:22
> To: Ekta Jain
> Cc: bioconductor at r-project.org
> Subject: Re: [BioC] lumiHumanIDMapping package does not exist for windows?
>
> On Thu, May 3, 2012 at 4:39 AM, Ekta Jain <Ekta_Jain at jubilantbiosys.com> wrote:
>> Dear All,
>> The lumiHumanIDMapping package does not seem to have the windows binary files available on the Bioconductor website - http://www.bioconductor.org/packages/release/data/annotation/html/lumiHumanIDMapping.html
>>
>> Can anyone please tell me where i can get the same .gz package from?
>
> I'll look into why this is not available for windows, but in the
> meantime you can install it as follows:
>
> source("http://bioconductor.org/biocLite.R")
> biocLite("lumiHumanIDMapping", type="source")
>
> Dan
>
>>
>> Many Thanks,
>> Ekta
>> Senior Research Associate
>> Bioinformatics Department
>> Jubilant Biosys Pvt Ltd,
>> #96, Industrial Suburb, 2nd Stage
>> Yeshwantpur, Bangalore 560 022
>> Ph No : +91-80-66628346
>>
>>
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