[BioC] EdgeR error message when using plotSmear (missing values)

anna [guest] guest at bioconductor.org
Sun Nov 11 16:32:36 CET 2012


Dear all, at which step should I change my parameters to avoid this error message ? 
> detags <- rownames(y)[as.logical(de)]
> plotSmear(lrt, de.tags=detags)
Erreur dans quantile.default(M, c(0.05, 0.95)) : 
  missing values and NaN's not allowed if 'na.rm' is FALSE

thanks,
anna

 -- output of sessionInfo(): 

R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=French_France.1252  LC_CTYPE=French_France.1252   
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C                  
[5] LC_TIME=French_France.1252    

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] edgeR_3.0.0  limma_3.14.1


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