[BioC] GenomicFeatures Reading GFF Efficiency

[Marc Carlson]

Hi Dario,

Just a heads up that I am looking into this.

   Marc


On 11/15/2012 06:00 PM, Dario Strbenac wrote:
> After nearly 2 days, it gave an error :
>
> Processing splicing information for gtf file.
> Error in `colnames<-`(`*tmp*`, value = c("exon_chrom", "exon_start", "exon_end",  :
>    'names' attribute [9] must be the same length as the vector [6]
> In addition: Warning message:
> In .deduceExonRankings(exs) :
>    Infering Exon Rankings.  If this is not what you expected, then please be sure that you have provided a valid attribute for exonRankAttributeName
>
> This is the 1.10.0 version of GenomicFeatures in R 2.15.1.
>
> Meanwhile, GENCODE version 14 is released, so you wouldn't have wanted my object of version 13 annotations, in the end.
>
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