[BioC] SVA: problem loading on Windows

[Hooiveld, Guido]

Thanks Kasper,
Just reinstalled sva, Matric and mgcv through biocLite (like I always do to avoid 'mixing' problems), but this didn't solve the problem... Since it otherwise will get too complicated I just consider this as a good reason to update to the latest R version (2.15.2). 
Guido

-----Original Message-----
From: Kasper Daniel Hansen [mailto:kasperdanielhansen at gmail.com] 
Sent: Tuesday, November 20, 2012 17:52
To: Hooiveld, Guido
Cc: bioconductor at r-project.org
Subject: Re: [BioC] SVA: problem loading on Windows

You seem to have a problem with the Matrix package and the mgcv package.  Both of these ship with R, so I would guess this is indicative of a (big) problem with your R installation - you seem to be mixing packages from slightly different versions of R.  You could try re-installing your packages.  This really has nothing to do with sva.

Kasper

On Tue, Nov 20, 2012   at 11:08 AM, Hooiveld, Guido
<Guido.Hooiveld at wur.nl> wrote:
> Hi,
> I would like to load the library SVA but run into problems. The reported error message is too cryptic to me, so I would appreciate if someone could give a hint on how to solve it. As far as I know all dependencies are installed on my machine.
> Note that I never experienced this type of error before, also not when loading SVA (in previous versions of R).
>
> Thanks,
> Guido
>
>> library(sva)
> Loading required package: corpcor
> Loading required package: mgcv
> Error in inDL(x, as.logical(local), as.logical(now), ...) :
>   unable to load shared object 'C:/Program Files/R/R-2.15.1/library/Matrix/libs/i386/Matrix.dll':
>   LoadLibrary failure:  The specified procedure could not be found.
>
> In addition: Warning message:
> package 'mgcv' was built under R version 2.15.2
> Error: package 'mgcv' could not be loaded
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C                           LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] corpcor_1.6.4
>
> loaded via a namespace (and not attached):
> [1] grid_2.15.1     lattice_0.20-10 nlme_3.1-105
>>
>
>
> ---------------------------------------------------------
> Guido Hooiveld, PhD
> Nutrition, Metabolism & Genomics Group Division of Human Nutrition 
> Wageningen University Biotechnion, Bomenweg 2
> NL-6703 HD Wageningen
> the Netherlands
> tel: (+)31 317 485788
> fax: (+)31 317 483342
> email:      guido.hooiveld at wur.nl
> internet:   http://nutrigene.4t.com
> http://scholar.google.com/citations?user=qFHaMnoAAAAJ
> http://www.researcherid.com/rid/F-4912-2010
>
>
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>
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