[BioC] biomaRt error in scan file

Matthew McCormack mccormack at molbio.mgh.harvard.edu
Wed Oct 3 01:05:38 CEST 2012

When I run the following in biomaRt:
getBM(attributes=c('affy_ath1_121501', 'tair_locus', 'chromosome_name', 
'start_position', 'end_position', 'strand', 'transcript_count', 
'go_accession'), filters = 'affy_ath1_121501', values = affyids, mart = 

I get the following error:
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, 
na.strings,  :
   line 156 did not have 8 elements

    I seems that the file coming back has a value that does not have all 
8 attributes, but I don't know how I could fix that.


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