[BioC] NOISeq installation error

[Sean Davis]

On Mon, Oct 8, 2012 at 8:14 AM, Fatemehsadat Seyednasrollah
<fatsey at utu.fi> wrote:
> Sorry for that, this is my sessionInfo() output:
>
>> sessionInfo()
>
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] C/UTF-8/C/C/C/C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.4.8

It looks like your BiocInstaller package is out-of-date.  In a new R
session, try:

> source('http://bioconductor.org/biocLite.R')
> biocLite('NOISeq')

This worked fine for me with this sessionInfo().

> sessionInfo()
R version 2.15.1 Patched (2012-08-09 r60221)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.8.1

loaded via a namespace (and not attached):
[1] tools_2.15.1

> loaded via a namespace (and not attached):
> [1] tools_2.15.1
>
> ________________________________________
> From: seandavi at gmail.com [seandavi at gmail.com] on behalf of Sean Davis [sdavis2 at mail.nih.gov]
> Sent: Monday, October 08, 2012 3:11 PM
> To: Fatemehsadat Seyednasrollah
> Cc: bioconductor at r-project.org
> Subject: Re: [BioC] NOISeq installation error
>
> On Mon, Oct 8, 2012 at 8:04 AM, Fatemehsadat Seyednasrollah
> <fatsey at utu.fi> wrote:
>> Hi all,
>> I am trying to install NOISeq package from Bioconductor using commands :
>>  source("http://bioconductor.org/biocLite.R")
>> biocLite("NOISeq")
>>
>> But there is an error when installing: Warning message: package ‘NOISeq’ is not available (for R version 2.15.1)
>>
>
> When reporting errors, be sure to post the output of sessionInfo().
> Without that, we are all guessing a bit as to what your R setup is.
>
> Sean
>
>> But in the manual it is mentioned that NOISeq is available for R (>=2.0.3) so why is that?
>> Thanks in advance
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor