[BioC] Creating annotation package with a new database schema
fabian.grammes at umb.no
Mon Oct 22 14:57:56 CEST 2012
I am working with Atlantic salmon and am highly interested to make a
custom annotation package for the
microarray that I am using.
I've worked through the tutorial from Gabor Csardi ("Creating an
annotation package with a new database
schema" ), which was very helpful. However, I am struggling to
implement the bimap objects to access
the GO annotations that I have in the DB.
The GO data is stored in 6 tables (BP, BP_all, MF, MF_all, CC, CC_all)
looking like the format that I found for
the organism packages in BioC:
ID GOID evi
6092 GO:0000910 IEA
6092 GO:0040035 IEA
6092 GO:0000398 IEA
So if someone could help me/ point me to the correct way how to
implement the GO mappings
in an annotation package that would be great.
kind regards, Fabian
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