[BioC] a question about trimLRPatterns?

[Steve Lianoglou]

Hi,

On Tue, Oct 30, 2012 at 3:20 PM, wang peter <wng.peter at gmail.com> wrote:
> yeah
> i see
> but for other case
>
>
> subject = "TATAGTAGATATTGGAATNNNNGCACCATCAATAGATCGGAA"
>  Rpattern =              "NNNN"
>
> trimLRPatterns CANNOT  DO IT

Note that the title of the help page for `?trimLRpatterns` says: "Trim
Flanking Patterns from Sequences"

The NNNN pattern you are trying to "trim" is about as about as far
away from the definition of "flanking" as one can get ...

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact