[BioC] a question about trimLRPatterns?

[Hervé Pagès]

On 10/30/2012 01:21 PM, Steve Lianoglou wrote:
> Hi,
>
> On Tue, Oct 30, 2012 at 4:11 PM, wang peter <wng.peter at gmail.com> wrote:
>> thx
>> i must use another function to do glocal match
                                      ^^^^^^
Is this a new word for "global-local"? ;-) Sorry I couldn't resist.

H.

>> and trim them
>>
>> rigth?
>
> Sounds about right to me. Perhaps you're looking for `matchPattern` or
> `pairwiseAlignment`?
>
> Out of curiosity, are you pre-processing NGS data?
>
> If so, what type of reads have artifacts in the center that you want
> to remove but still "trust" the flanking sequence?
>
> -steve
>

-- 
Hervé Pagès

Program in Computational Biology
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