[BioC] bam files in sub-directories

René Böttcher [guest] guest at bioconductor.org
Wed Oct 31 11:05:09 CET 2012


I wanted to ask whether there is an option within the easyRNASeq method to specify sub-directories containing the bam files I want to analyse. 

My directory structure looks like this


So is it possible to run easyRNASeq without throwing all bam files in one directory?
Thus far, the only option I could think of would be to run easyRNASeq for every of my sample folders independently and then merge the resulting count objects somehow.

Any help is greatly appreciated.
Best regards,

 -- output of sessionInfo(): 


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