[BioC] bam files in sub-directories
RenÃ© BÃ¶ttcher [guest]
guest at bioconductor.org
Wed Oct 31 11:05:09 CET 2012
I wanted to ask whether there is an option within the easyRNASeq method to specify sub-directories containing the bam files I want to analyse.
My directory structure looks like this
So is it possible to run easyRNASeq without throwing all bam files in one directory?
Thus far, the only option I could think of would be to run easyRNASeq for every of my sample folders independently and then merge the resulting count objects somehow.
Any help is greatly appreciated.
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