[BioC] regarding mapping package

[Martin Morgan]

On 08/31/2012 03:47 AM, deepika lakhwani wrote:
> hello...
>
> please suggest me the R package for genome mapping of Arabidopsis, actually
> i have genomic data of Arabidopsis so i want to map on it whole genome.

Hi Deepika -- it's not clear what you're asking. Aligning short reads? 
Maybe Rsubread or in the devel version of Bioconductor gmapR. 
Annotations? maybe org.At.tair.db. Whole genome? one of the 
BSgenome.Athaliana.TAIR.* genomes at 
http://bioconductor.org/packages/release/BiocViews.html#___AnnotationData.

Hope that helps, Martin

>
>
>
> regards
>
> deepika
>
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