[BioC] a question about how can i display list of differentially expressed genes

[Martin Morgan]

On 09/01/2012 04:00 AM, Islam Amin wrote:
> i am using EMA package for mining gene expression data , i need to get list
> of gene expression.
> here is some of code:

Hi -- EMA is a CRAN package so the correct person to ask is

   packageMaintainer("EMA")$Maintainer

Martin

>
>> rbasalt <-   runTtest(basalt, blabelt,typeFDR="FDR-BH",algo="t", q=0.01,
> plot=TRUE)
> Launch t test
> Calculate pval
> Adjusted pval
> [1] "typeFDR= FDR-BH"
> 25significant genes
>
> after run t-test it told me that there is 25 5significant genes , all what
> i want to display these 25 genes by the way the structure of Result of test(
> rbasalt), also can i save this genes in excel file or text file
>
>
>> rbasalt[1:5,]
>         probeID       Stat  RawpValue AdjpValue
> 1   AATK_E63_R  2.0216082 0.06002803 0.2962039
> 2  AATK_P519_R  0.7427987 0.46567086 0.6881159
> 3  AATK_P709_R  1.1541733 0.26102790 0.5323130
> 4 ABCA1_E120_R -2.5309415 0.01903356 0.1651541
> 5  ABCA1_P45_F -0.4280318 0.67279141 0.8117478
>
>


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