[BioC] edgeR GLM error

Gordon K Smyth smyth at wehi.EDU.AU
Thu Sep 13 02:43:21 CEST 2012

Dear Javier,

This error has been discused a number of times on this list.  The 
solution is to upgrade edgeR to the current devel version.

Also please see the Bioconductor posting guide:


Best wishes

> Date: Tue, 11 Sep 2012 13:04:55 +0200
> From: Javier Sim?n-S?nchez <simonsanchezj at gmail.com>
> To: bioconductor at r-project.org
> Subject: [BioC] edgeR GLM error
> Hello,
> My name is Javier Simón Seanchez and I'm a post-doc at the VUmc in
> Amsterdam.
> The reason of this e-mail is that im running edgeR in an expression dataset
> and getting the following error when calculating the GLM common dispersion:
> *Error in beta[k, ] <- betaj[decr, ] :
>  NAs are not allowed in subscripted assignments
> *
> Im running cases versus controls and I want to modulate for different
> tissues. How can I overcome this error?
> Thanks a lot in advance
> -- 
> Javier Simon-Sanchez

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