[BioC] DESeq - working with more than 2 conditions
whuber at embl.de
Thu Sep 13 11:34:56 CEST 2012
please have a look at Section 4 of the DESeq vignette.
On 9/13/12 8:53 AM, Vincenzo Capece wrote:
> Dear all,
> I am a R beginner and I hope you can help me.
> I have a question about DESeq: DESeq works fine if I have 2
> treated untreated
> ENSMUSG00000000001 193 254
> ENSMUSG00000000003 0 0
> ENSMUSG00000000028 10 13
> ENSMUSG00000000031 0 4
> ENSMUSG00000000037 8 9
> ENSMUSG00000000049 6 8
> but if I have data about more than two conditions, for instance
> 1-month-treated,3-months-treatead, 6-months-treated,untreated, can I use
> DESeq? If not, Which R package (if it exists)do you suggest to use?
> Thanks in advance.
> [[alternative HTML version deleted]]
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