[BioC] Install devel version of edgeR

[Gordon K Smyth]

Dear Javier,

This is a question for the Bioc managers, but the following page might 
answer your question:

  http://www.bioconductor.org/developers/useDevel/

Best wishes
Gordon

On Thu, 13 Sep 2012, Javier Simón-Sánchez wrote:

> Hello Gordon,
>
> Thanks a lot for your reply.
>
> How can I upgrade to the latest version of edge R? I have checked on  the
> list and it looks like i need version 2.99.3. However, the one you provide
> at http://www.bioconductor.org/packages/2.10/bioc/html/edgeR.html is
> edgeR_2.6.12. How can I get the needed version?
>
> Thanks a lot for your help.
>
> On Thu, Sep 13, 2012 at 2:43 AM, Gordon K Smyth <smyth at wehi.edu.au> wrote:
>
>> Dear Javier,
>>
>> This error has been discused a number of times on this list.  The solution
>> is to upgrade edgeR to the current devel version.
>>
>> Also please see the Bioconductor posting guide:
>>
>>  http://www.bioconductor.org/**help/mailing-list/posting-**guide/<http://www.bioconductor.org/help/mailing-list/posting-guide/>
>>
>> Best wishes
>> Gordon
>>
>>  Date: Tue, 11 Sep 2012 13:04:55 +0200
>>> From: Javier Sim?n-S?nchez <simonsanchezj at gmail.com>
>>> To: bioconductor at r-project.org
>>> Subject: [BioC] edgeR GLM error
>>>
>>> Hello,
>>> My name is Javier Simón Seanchez and I'm a post-doc at the VUmc in
>>> Amsterdam.
>>>
>>> The reason of this e-mail is that im running edgeR in an expression
>>> dataset
>>> and getting the following error when calculating the GLM common
>>> dispersion:
>>>
>>> *Error in beta[k, ] <- betaj[decr, ] :
>>>  NAs are not allowed in subscripted assignments
>>> *
>>>
>>> Im running cases versus controls and I want to modulate for different
>>> tissues. How can I overcome this error?
>>>
>>> Thanks a lot in advance
>>>
>>> --
>>> Javier Simon-Sanchez
>>>
>>>
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>
>
>
>
> -- 
> Javier Simon-Sanchez
>

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