[BioC] an error when i installed the DESeq

[Steve Lianoglou]

On Fri, Sep 14, 2012 at 4:22 PM, wang peter <wng.peter at gmail.com> wrote:
> i killed the vius on my computer and then cannot load DESeq

Or, perhaps, the virus killed your computer ...

It seems you have a lot of blow out from your virus (I recall you
posted a problem w/ edgeR yesterday).

This is what I might try to do -- not necessarily in this order:

(1) Start R in terminal via:  R --vanilla
(2) Perhaps blow out your R install and reinstall it all (doing the
same w/ your packages)
(3) Go nuclear and install linux instead of windows and start the
process of putting the pieces of your life back together in a more
permanent fashion.

HTH,
-steve

>
>> library(DESeq)
> Loading required package: locfit
> Error in get(Info[i, 1], envir = env) :
>   internal error -3 in R_decompress1
> Error: package ‘locfit’ could not be loaded
>
> then i stalled
>> library(locfit)
> Error in get(Info[i, 1], envir = env) :
>   internal error -3 in R_decompress1
> Error: package/namespace load failed for ‘locfit’
>
>
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
> [2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
> [3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
> [4] LC_NUMERIC=C
> [5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.4.7 Biobase_2.16.0      BiocGenerics_0.2.0
>
> loaded via a namespace (and not attached):
> [1] grid_2.15.1  tools_2.15.1
>
> --
> shan gao
> Room 231(Dr.Fei lab)
> Boyce Thompson Institute
> Cornell University
> Tower Road, Ithaca, NY 14853-1801
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>
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-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact