[BioC] topGO: full-length descriptions in graph output
fs5 at sanger.ac.uk
Sun Sep 16 23:00:49 CEST 2012
Thanks for your reply. Yes, I did notice that and I tried to change it
but it had no effect. I'll try again - maybe I did something wrong.
On 13/09/12 18:34, James W. MacDonald wrote:
> Hi Frank,
> On 9/13/2012 4:29 AM, Frank Schwach [guest] wrote:
>> does anybody know if there is any way in the topGO package to force
>> full-length descriptions of the GO terms to be printed in the graph?
>> By default, only about 20 characters of the descriptions are printed.
> If you look at the help page for showSigOfNodes(), there is an
> argument .NO.CHAR that is listed as an internal function. This
> controls the number of characters that are shown in the graph, and
> defaults to 20.
> You can bump that up to whatever value you see fit, but note that it
> *is* listed as an internal function, so you are stepping into the deep
> end of the pool - if things don't work the way you want, it will
> likely be up to you to figure out why and fix it.
>> Thanks for your help!
>> -- output of sessionInfo():
>> R version 2.11.1 (2010-05-31)
>>  LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
>>  LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
>>  LC_MONETARY=C LC_MESSAGES=C
>>  LC_PAPER=en_GB.UTF-8 LC_NAME=C
>>  LC_ADDRESS=C LC_TELEPHONE=C
>>  LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
>> attached base packages:
>>  stats graphics grDevices utils datasets methods base
>> other attached packages:
>>  topGO_1.16.2 SparseM_0.85 GO.db_2.4.1
>>  RSQLite_0.9-1 DBI_0.2-5 AnnotationDbi_1.10.1
>>  Biobase_2.8.0 graph_1.26.0
>> loaded via a namespace (and not attached):
>>  grid_2.11.1 lattice_0.18-8 tools_2.11.1
>> Sent via the guest posting facility at bioconductor.org.
>> Bioconductor mailing list
>> Bioconductor at r-project.org
>> Search the archives:
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
More information about the Bioconductor