[BioC] Problem with SPILL matrix / keyword when using write.FCS and flowCore?

Mike wjiang2 at fhcrc.org
Thu Sep 27 02:03:22 CEST 2012


write.FCS was trying to replace empty value for each keyword in order to conform to FCS3.0. The replacement command sub("^$"," ",y) apparently mess up the original spillover matrix. I just fixed it by skipping the replacement for spillover keyword. The fix (version 1.23.7) should appear in BioC development branch in one day.
Optionally you can check out from https://github.com/RGLab/flowCore.



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