[BioC] how to adjust p-value in edgeR

wang peter wng.peter at gmail.com
Thu Sep 27 17:46:23 CEST 2012

DEAR all:
          i got the test result by such coding

et <- exactTest(d, pair=c("c0h","t0h"), dispersion="tagwise")

usually should use topTags to adjust the p value, but it canot sort.by
gene id or names

result <- topTags(et, n=dim(d)[1], adjust.method="BH", sort.by="p.value")

i want to use et$table, but donot know how to adjust its p-value

thank you very much

shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839 at cornell.edu

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