[BioC] fRMA for Gene ST arrays

[Naxerova, Kamila]

Dear list,

to preprocess Affymetrix whole transcript arrays, use of oligo and xps is recommended over the affy package. I am interested in using the GNUSE algorithm to assign quality scores to some arrays, and would also like to try out the barcode function in the frma package. I am now wondering... is frma compatible with whole transcript arrays?

Thanks a lot.
Kamila