[BioC] Problem with ChIPpeakAnno - assignChromosomeRegion

[Zhu, Lihua (Julie)]

Venu,

Thanks for your kind words and feedback!

Which version of ChIPpeakAnno did you use? This function has been modified
extensively recently. Could you please try the new one at
http://www.bioconductor.org/packages/2.12/bioc/html/ChIPpeakAnno.html?
Thanks!

Best regards,

Julie


On 4/10/13 12:19 PM, "Venu Pullabhatla" <venu.pullabhatla at kcl.ac.uk> wrote:

> Dear Lihua
> 
> Firstly many thanks for providing a wonderful tool for the scientific
> community. I tried using chippeakanno software for identifying the
> distribution of enriched regions with "assignChromosomeRegion". The only
> difference in the way I used is to make pie charts rather boxplots. It
> was great to see the output. It worked amazingly well for 2 samples
> (example attached), but ended up with an error to the other two. This is
> the error encountered. Google search really did not help me in this
> case. Can you please help me in finding the problem and fixing it.
> 
> Error in ann.utr5.peaks[ann.utr5.peaks$insideFeature == "upstream", ] :
>    selecting rows: subscript contains NAs
> Calls: assignChromosomeRegion -> [ -> [
> Execution halted
> 
> 
> Many thanks in advance for all the help.
> 
> Best wishes
> 
> Venu
> 
> 
>