[BioC] Error installing impute package

Peter Langfelder peter.langfelder at gmail.com
Wed Apr 10 23:41:35 CEST 2013


Hello,

a user of my (CRAN) package WGCNA which depends on impute has a
problem installing impute on his Mac OSX 10.8.3 under R 3.0.0. The
problem seems to be loading the compiled libary impute.so. Can anyone
please suggest a solution? Below is a transcript of his session.

Thanks,

Peter

> biocLite("impute", lib = .libPaths())
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.12 (BiocInstaller 1.10.0), R version 3.0.0.
Installing package(s) 'impute'
trying URL 'http://bioconductor.org/packages/2.12/bioc/bin/macosx/contrib/3.0/impute_1.34.0.tgz'
Content type 'application/x-gzip' length 652872 bytes (637 Kb)
opened URL
==================================================
downloaded 637 Kb


The downloaded binary packages are in
        /var/folders/x_/wps51c0n0tx33tx406_xt9n80000gn/T//Rtmpd8CN5X/downloaded_packages
> library(impute)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.0/Resources/library/impute/libs/impute.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/impute/libs/impute.so,
6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
  Referenced from:
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/impute/libs/impute.so
  Reason: image not found
Error: package or namespace load failed for ‘impute’



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