[BioC] BiocInstaller on R-devel

[Martin Morgan]

On 04/10/2013 05:43 PM, Kasper Daniel Hansen wrote:
> Right now, I get that R-devel uses BiocInstaller 1.10.0 and points to
> Bioconductor 2.12, the same as R-3.0.  Shouldn't it point to Bioconductor
> 2.13 for R-devel?

Hi Kasper -- remember that, because R is now on a yearly release cycle, we're 
using R-3.0.x for both release and devel for the next ~6 months, see

   http://bioconductor.org/developers/useDevel/

and after

   source("http://bioconductor.org/biocLite.R")
   useDevel()

But actually, I think your R-devel is a little out of date and that with 
something more recent than

------------------------------------------------------------------------
r62488 | ligges | 2013-04-03 16:12:25 -0700 (Wed, 03 Apr 2013) | 1 line

update BioC devel to 2.13
------------------------------------------------------------------------

you'll get

 > source("http://bioconductor.org/biocLite.R")
Installing package into ‘/home/mtmorgan/R/x86_64-unknown-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
trying URL 
'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/BiocInstaller_1.11.0.tar.gz'

...

Martin


>
> Best,
> Kasper
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>


-- 
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793