[BioC] Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0

[James W. MacDonald]

Hi Karin,

I should also note that there won't be a cdf package for this array - 
Affy doesn't have one available, so you will have to use either oligo or 
xps (or the Affy miRNA QC tool) to process them.

Best,

Jim



On 4/26/2013 9:47 AM, K. Weigelt wrote:
> Dear Sir or Madam,
>
> I would like to analyze array data from Affymetrix microRNA microarray platform 3.0 using BRB array tools,
> but it seems that like there is no CDF file available for these arrays yet?
>
> I could find the "pd.mirna.3.0" package, but this doesn't seem to include the CDF file?
>
> Thank you very much for your help!
>
> Kind regards,
> Karin Weigelt
>
> Karin Weigelt, PhD
> Department of Immunology
> Erasmus Medical Center
> Dr. Molewaterplein 50
> 3015 GE Rotterdam
> The Netherlands
> Phone    : + 31 10 704 4108
> Fax    : + 31 10 704 4731
> Email: k.weigelt at erasmusmc.nl<mailto:k.weigelt at erasmusmc.nl>
>
>
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>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099