[BioC] Troubles with IdeogramTrack

[Robert Ivánek]

Hi,

this has been already fixed in version 1.4.1 (release) and 1.5.1 (devel).

Best
Robert

On 27 Apr 2013, at 15:08, Deisy Gysi <deisygysi at gmail.com> wrote:

> Hi,
> 
> I'm having some troubles with the IdeogramTrack.
> 
> When I made the IdeogramTrack it works, but when I tray to plot it using
> plotTracks it says that I cannot plot it.
> 
> But I made this plot this week -worked-, and suddenly in the day after it
> doenst worked anymore. And still doens't.
> 
> Can someone help me? Did anyone here had this problem before?
> 
> 
> Thanks in advance,
> Deisy
> 
>> plotTracks(IdeogramTrack(genome="hg19", chromossome = 2))
> Erro em seqnames(seqinfo) :
>  erro na avaliação do argumento 'x' na seleção do método para a função
> 'seqnames': 'Erro em validObject(.Object) :
>  invalid class “Seqinfo” object: 'seqnames(x)' cannot contain zero-length
> or duplicated names
> '
> 
> 
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-linux-gnu (64-bit)
> 
> locale:
> [1] LC_CTYPE=pt_BR.UTF-8       LC_NUMERIC=C
> LC_TIME=pt_BR.UTF-8        LC_COLLATE=pt_BR.UTF-8
> [5] LC_MONETARY=pt_BR.UTF-8    LC_MESSAGES=pt_BR.UTF-8
> LC_PAPER=C                 LC_NAME=C
> [9] LC_ADDRESS=C               LC_TELEPHONE=C
> LC_MEASUREMENT=pt_BR.UTF-8 LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] splines   grid      stats     graphics  grDevices utils     datasets
> methods   base
> 
> other attached packages:
> [1] org.Hs.eg.db_2.8.0
> RSQLite_0.11.2
> DBI_0.2-5
> [4] rtracklayer_1.18.2
> TxDb.Hsapiens.UCSC.hg19.knownGene_2.8.0
> GenomicFeatures_1.10.2
> [7] AnnotationDbi_1.20.7
> Biobase_2.18.0
> gwascat_1.2.1
> [10] graph_1.36.2
> snpStats_1.8.2
> Matrix_1.0-12
> [13] lattice_0.20-15
> survival_2.37-4
> GenomicRanges_1.10.7
> [16] IRanges_1.16.6
> BiocGenerics_0.4.0
> Gviz_1.2.1
> [19] ggbio_1.6.6
> ggplot2_0.9.3.1
> 
> loaded via a namespace (and not attached):
> [1] biomaRt_2.14.0           Biostrings_2.26.3
> biovizBase_1.6.2         bitops_1.0-5             BSgenome_1.26.1
> [6] cluster_1.14.4           colorspace_1.2-1
> dichromat_2.0-0          digest_0.6.3             gridExtra_0.9.1
> [11] gtable_0.1.2             Hmisc_3.10-1
> labeling_0.1             MASS_7.3-19              munsell_0.4
> [16] parallel_2.15.1          plyr_1.8
> proto_0.3-10             RColorBrewer_1.0-5       RCurl_1.95-4.1
> [21] reshape2_1.2.2           Rsamtools_1.10.2
> scales_0.2.3             stats4_2.15.1            stringr_0.6.2
> [26] tools_2.15.1             VariantAnnotation_1.4.12
> XML_3.96-1.1             zlibbioc_1.4.0
> 
> 
>> traceback()
> Nenhum rastreamento disponível
> 
> 
> 
> 
> -- 
> Atenciosamente,
> Deisy Morselli Gysi
> 
> Bacharel em Biotecnologia
> Bacharel em Estatística
> 
> 	[[alternative HTML version deleted]]
> 
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