[BioC] AnnotationHub man page improvements

[Marc Carlson]

Hi Kasper,

I think you could just do the following:

ah[["goldenpath.hg19.encodeDCC.wgEncodeUwTfbs.wgEncodeUwTfbsMcf7CtcfStdPkRep1.narrowPeak_0.0.1.RData"]]

Instead of using $ like usual:

ah$goldenpath.hg19.encodeDCC.wgEncodeUwTfbs.wgEncodeUwTfbsMcf7CtcfStdPkRep1.narrowPeak_0.0.1.RData


Does that solve your problem?


   Marc





On 07/31/2013 06:14 PM, Kasper Daniel Hansen wrote:
> I was wrong about ahinfo.  Is there an exposed interface to getting the
> result of a path, assuming the path is a character vector.  I see I can do
>    AnnotationHub:::.getResource(hub, path)
> with hub an AnnotationHub and path a character vector.
>
> Such an interface would be extremely useful.
>
>
> On Wed, Jul 31, 2013 at 9:02 PM, Kasper Daniel Hansen <
> kasperdanielhansen at gmail.com> wrote:
>
>> About ?AnnotationHub (package version 1.1.8)
>>
>> All the functions whose values are described under "Value" are not
>> described under "Usage".  All the functions listed under "Usage" are not
>> described under "Value".
>>
>> The ahinfo (which seems to be a key function for doing things
>> programmatically) is not described under either "usage" or "value".
>>
>> The examples are great though.
>>
>> Best,
>> Kasper
>>
> 	[[alternative HTML version deleted]]
>
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