[BioC] I need BSgenome for Eucalyptus grandis

[Rodrigo Hasbun [guest]]

Hi

I am a young researcher initiating in the use of short sequences generated by NGS for methylation analysis. Currently I am working with MRE-seq in Eucalyptus grandis and I would like to apply MEDIPs for my analysis . The problem is that I have not a BSgenome for this species. It is possible that you generate?

Best

Rodrigo

 -- output of sessionInfo(): 

> forgeBSgenomeDataPkg("path/to/my/seed")
Error: no se pudo encontrar la funci'on "forgeBSgenomeDataPkg"
> library(BSgenome)
Loading required package: GenomicRanges
Mensajes de aviso perdidos
1: package 'BSgenome' was built under R version 2.12.1 
2: package 'GenomicRanges' was built under R version 2.12.1 
> forgeBSgenomeDataPkg("path/to/my/seed")
Error en .readSeedFile(x, verbose = verbose) : 
  seed file 'path/to/my/seed' not found
> forgeBSgenomeDataPkg(/Volumes/Datos/SeqEuca)
Error: inesperado '/' en "forgeBSgenomeDataPkg(/"
> forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca)
Error en forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca) : 
  error in evaluating the argument 'x' in selecting a method for function 'forgeBSgenomeDataPkg'
> forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca)
Error en forgeBSgenomeDataPkg(Volumes/Datos/SeqEuca) : 
  error in evaluating the argument 'x' in selecting a method for function 'forgeBSgenomeDataPkg'
> 

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