[BioC] XPS package QC data
haba18 at yandex.ru
Fri Aug 16 13:58:25 CEST 2013
I use xps package for my HuGene ST 1.0 array and need some help in quality control. I used arrayQualityMetrics package before new version of R was avaliable which doesn't maintain affy package for ST arrays. ArrayQualityMetrics creates good report with "outliers" assays, which are out of borders (for example, cut-offs for NUSE is 1.1), but I've not seen this in xps.
Is it possible to receive this data (median and IQR for NUSE or RLE) using xps package?
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