[BioC] error while using goProfiles package on arabidopsis entrez gene IDs
guest at bioconductor.org
Thu Aug 22 11:07:22 CEST 2013
I was using goProfiles package for functional analysis using a genelist of 316 Arabidopsis entrez gene IDs as shown below in the R command sessionInfo().
- Read a file containing Entrez IDs and TAIR IDs.
- Subset the Entrez IDs and converted to character vector.
- Used the vector as genelist.
-Used goProfiles package function basicProfile for this genelist with organism package of Arabidopsis.
OUTPUT :Error in GOtermslist[[i]] : subscript out of bounds.
Can somebody please help me in finding any mistake I might have done?
Thanks in advance.
-- output of sessionInfo():
Console output :
>> a<-read.table("tair_ids to gene_ids.csv" ,header=TRUE,sep=",")
>  "839235" "838362" "838961" "837091" "837455" "837543"
>> h<-basicProfile(b,idType="Entrez",onto ="ANY",level=2,orgPackage="org.At.tair.db",ord=FALSE)
> Error in GOtermslist[[i]] : subscript out of bounds
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