[BioC] EdgeR: getting CPM values after batch effect correction

Ryan rct at thompsonclan.org
Wed Aug 28 01:45:34 CEST 2013

You would have to define batch correction. Are you talking about 
fitting a model of the form "~ experimetalVar + batchEffect" and then 
subtracting out the batch effect coefficient?

On Sun Aug 25 11:11:55 2013, Gilgi Friedlander wrote:
> Dear list,
> In edgeR, it possible to get CPM values after batch effect correction (and after TMM normalization)?
> Thanks a lot!
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