[BioC] edgeR

Joanne.Lee at csiro.au Joanne.Lee at csiro.au
Wed Aug 28 07:23:43 CEST 2013

Dear Bioconductor,

I'm using EdgeR to find differentially expressed reads within 100bp windows. To help my analysis later on I'd like EdgeR to give me an output that contains every 100bp window I have regardless of if it's differentially expressed or not. I've attached a log of what I normally do to get differentially expressed read output. Any help on how to get the expression data back from all 2393345 windows would be really appreciated.


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