[BioC] enrichment packages that accept t-stat (or related stat) as input

Robert Castelo robert.castelo at upf.edu
Thu Aug 29 08:43:08 CEST 2013


i think the first 5 pages in the vignette entitled "Using Categories to 
Analyze Microarray Data" from the Category package:


may be doing what you are looking for.


On 08/28/2013 08:04 PM, Juliet Hannah wrote:
> All,
> I am looking for an Bioconductor enrichment package that does something
> similar to GSEA for pre-computed test statistics. This method would not
> rely on a cutoff. That is, rather than passing an expression matrix, one
> can compute summarizes outside of the package (such as a limma t), and then
> pass these. Any suggestions?
> Thanks,
> Juliet
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Robert Castelo, PhD
Associate Professor
Dept. of Experimental and Health Sciences
Universitat Pompeu Fabra (UPF)
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Dr Aiguader 88
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telf: +34.933.160.514
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