[BioC] enrichment packages that accept t-stat (or related stat) as input

[Robert Castelo]

Juliet,

i think the first 5 pages in the vignette entitled "Using Categories to 
Analyze Microarray Data" from the Category package:

http://www.bioconductor.org/packages/release/bioc/html/Category.html

may be doing what you are looking for.

cheers,
robert.

On 08/28/2013 08:04 PM, Juliet Hannah wrote:
> All,
>
> I am looking for an Bioconductor enrichment package that does something
> similar to GSEA for pre-computed test statistics. This method would not
> rely on a cutoff. That is, rather than passing an expression matrix, one
> can compute summarizes outside of the package (such as a limma t), and then
> pass these. Any suggestions?
>
> Thanks,
>
> Juliet
>
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>
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-- 
Robert Castelo, PhD
Associate Professor
Dept. of Experimental and Health Sciences
Universitat Pompeu Fabra (UPF)
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