[BioC] Genes, their domains, and a list of superimposed mutations

[Gabriele [guest]]

Dear Bioconductor mailing list,

I was wondering if anyone knows whether there is any package to plot figures with a given gene, its domains, and symbols from a list of pre-specified mutations, something like what is seen in the cBio portal (http://www.cbioportal.org/public-portal/index.do) when one looks for mutations, or in COSMIC (see this example: http://cancer.sanger.ac.uk/cosmic/gene/analysis?ln=BRAF#histo )... I haven't found anything although I did my research...

Thanks! 

 -- output of sessionInfo(): 

R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base  

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